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PAMAM树形分子与生物膜相互作用的粗粒化模拟

摘要第4-6页
英文摘要第6-8页
Chapter 1 Current studies on PAMAM dendrimers第16-30页
    1.1 Introduction第16-17页
    1.2 Insights into the conformation and dynamics of PAMAM dendrimers第17-18页
    1.3 Interactions of PAMAM dendrimers with surfactants第18页
    1.4 Interactions of PAMAM dendrimers with biomembranes第18-25页
        1.4.1 Experimental observations第19-22页
        1.4.2 Computer simulations第22-25页
    1.5 Possible mechanisms for the formation of nanoscale holes in the mem-brane第25-30页
Chapter 2 Coarse-grained MARTINI force field第30-40页
    2.1 Introduction第30-31页
    2.2 Mapping第31-32页
    2.3 Patticle interactions第32-34页
        2.3.1 Nonbonded interactions第32-33页
        2.3.2 Bonded interactions第33-34页
    2.4 Simulation parameters第34-35页
    2.5 Modeling of the components used in this thesis第35-40页
        2.5.1 DMPC and DMPG lipids第35页
        2.5.2 PAMAM dendrimer第35-37页
        2.5.3 Waters第37-40页
Chapter 3 Computer simulations of the interactions of high-generation polyami-doamine dendrimers with electronegative membranes第40-58页
    3.1 Background第40-41页
    3.2 Model and methods第41-43页
    3.3 Radius of gyration of G7, G8, and G9 dendrimers and area per lipid in the MARTINI force field第43-44页
    3.4 Interaction between dendrimers and the 3:7 DMPG/DMPC bilayer第44-49页
        3.4.1 The morphology change of dendrimers第44-46页
        3.4.2 Formation of DMPG-rich microdomains第46-47页
        3.4.3 van der Waals energy and electrostatic interactions第47-49页
    3.5 Defect-mediated formation of dendrimer-encased vesicles第49-56页
        3.5.1 Formation of dendrisomes第49-54页
        3.5.2 Lipid removal mechanism for the formation of nanoscale holes第54-56页
    3.6 Interactions between membranes with G5 and G6 dendrimers第56页
    3.7 Concluding remarks第56-58页
Chapter 4 A systematic study of interactions between PAMAM dendrimers and lipid membranes in gel and fluid phases using coarse-grained molecu-lar dynamics simulation第58-81页
    4.1 Background第58-61页
    4.2 Model and methods第61-62页
    4.3 Radius of gyration of dendrimers from G3 to G7 and area per lipid in the MARTINI force field第62-64页
    4.4 Interaction between a G7 PAMAM dendrimer and a 1:1 DMPG/DMPC gel-phase bilayer第64-71页
        4.4.1 Membrane fluidization第64-69页
        4.4.2 Phase transition factors第69-71页
    4.5 The effect of dendrimer generation/size and lipid phase on the dendrimer-membrane interactions第71-79页
        4.5.1 Dendrimer-membrane complexes第71-75页
        4.5.2 Membrane fluidization第75-78页
        4.5.3 Morphology change of dendrimers第78-79页
    4.6 Concluding remarks第79-81页
Chapter 5 Computer simulation of the effects of dendrimer hydrophobicity and concentration on the interaction between dendrimers and membranes第81-105页
    5.1 Background第81-83页
    5.2 Model and methods第83-85页
    5.3 Results and discussion第85-103页
        5.3.1 The interactions between standard G5 PAMAM dendrimers and membranes第86-97页
        5.3.2 The interactions between hydrophobic G5 dendrimers and mem-branes第97-103页
    5.4 Concluding remarks第103-105页
Chapter 6 Conclusions and Outlook第105-110页
Bibliography第110-123页
Acknowledgement第123-125页
附件第125页

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