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Functional Analysis of Hsbp and Two Other Stress Related Gene Families in Rice (Oryza Sativa L.)

ABSTRACT第8-11页
List of Abbreviations第12-14页
Part I Review of literature第14-32页
    Chapter I A cross talk between cell death and life: Protein repair, recyclingand degradation第14-32页
        ABSTRACT第14页
        1.1. PLANT STRESS RESPONSE第14-15页
        1.2. HEAT SHOCK PROTEINS AS MOLECULAR CHAPERONES第15-18页
        1.3. HEAT SHOCK FACTORS第18-21页
        1.4. REGULATION OF HEAT SHOCK RESPONSE第21-22页
        1.5. HSBP AS HSF REGULATOR第22-24页
        1.6. BAG AS CO-CHAPERONES第24-25页
        1.7. UNFOLDED PROTEIN RESPONSE AND AUTOPAGY第25-26页
        1.8. ATG6/BECLIN1 PROTEINS第26-27页
        1.10. RECENT RESEARCH ADVANCES IN RICE ON HSR第27-29页
        1.11. STUDY OBJECTIVES第29-32页
PART Ⅱ EXPERIMENTS第32-116页
    Chapter II Heat Shock Factor Binding Protein 1 and 2 as negativeregulators of heat shock response in rice第32-76页
        ABSTRACT第32-33页
        2.1. INTRODUCTION第33-35页
        2.2. MATERIALS AND METHODS第35-45页
            2.2.1. Plant materials, growth conditions and treatments第35页
            2.2.2. Bioinformatic analysis of OsHSBP1 and OsHSBP2第35-36页
            2.2.3. RNA extraction and first-strand cDNA synthesis第36页
            2.2.4. Gene cloning and vector construction第36-37页
            2.2.5. Semi-quantitative RT-PCR第37页
            2.2.6. Quantitative real-time RT-PCR第37页
            2.2.7. Sub-cellular localization第37-39页
            2.2.8. Trans-activation and self-binding assay through yeast two-hybrid第39-40页
            2.2.9. Transgenic rice development and identification第40页
            2.2.10. Determination of antioxidant (CAT, POD and SOD) activity第40-42页
            2.2.11. Identification of OsHSBP1 and OsHSBP2 mutants第42页
            2.2.12. Phenotypic data第42-43页
            2.2.13. Primers第43-45页
        2.3. RESULTS第45-71页
            2.3.1. OsHSBP1 and OsHSBP2 are functional homologs among plants and animals第45-50页
            2.3.2. Cloning of target gene第50-53页
            2.3.3. Expression analysis of OsHSBP1 and OsHSBP2 in rice tissues第53页
            2.3.4. Expression analysis of OsHSBP1 and OsHSBP2 under heat stress第53-55页
            2.3.5. Subcellular localization of OsHSBP1 and OsHSBP2第55-57页
            2.3.6. Trans-activation and self-binding assay of OsHSBP1 and OsHSBP2第57-59页
            2.3.7. Vector construction for over-expression and knock-down第59-60页
            2.3.8. Confirmation of transgenic and mutants第60-62页
            2.3.9. Thermotolerance assay第62-64页
            2.3.10. Analysis of antioxidant activity第64-66页
            2.3.11. Expression analysis of antoxidatnt (CAT and POD) and heat specific HSP genes in transgenic lines第66-68页
            2.3.12. Premature seed abortion第68-71页
        2.4. DISCUSSION第71-76页
    Chapter IIII dentification and characterization of The Bcl-2-associatedathanogene (BAG) family in rice第76-94页
        ABSTRACT第76-77页
        3.1. INTRODUCTION第77-78页
        3.2. MATERIALS AND METHODS第78-80页
            3.2.1 Plant materials, growth conditions and stress treatments第78页
            3.2.2 Identification of BAG family in rice第78-79页
            3.2.3 Multiple sequence alignment and phylogenetic relationship第79页
            3.2.4 Protein structure model第79页
            3.2.5 "Digital Northern" analysis of BAG gene expression in rice第79页
            3.2.6 Expression analysis of OsBAG family in rice based on microarray data第79-80页
            3.2.7 Expression of OsBAG gene family in rice byreal-time RT-PCR第80页
        3.3. Results第80-90页
            3.3.1. Identification of BAG family in rice第80-81页
            3.3.2. Genomic organization, chromosomal distribution and subcellular localization第81-82页
            3.3.3. Alignment and phylogenetic relationship第82-85页
            3.3.4. Comparison of the rice BAG BDs with template model第85-86页
            3.3.5. Digital northern analysis第86-87页
            3.3.6. Expression analysis of OsBAG family in rice based on microarray data第87-89页
            3.3.7. Expression pattern of six OsBAG genes in rice organs第89页
            3.3.8 Expression analysis of six OsBAG genes in rice seedlings under heat stress第89-90页
        3.4. DISCUSSION第90-94页
    Chapter IV Identification and characterization of ATG6 / Beclin-1 homologsin rice第94-116页
        ABSTRACT第94页
        4.1. INTRODUCTION第94-96页
        4.2. MATERIALS AND METHODS第96-98页
            4.2.1. Plant materials, growth conditions and stress treatments第96页
            4.2.2. Identification of ATG6 domain in rice第96页
            4.2.3. Multiple sequence alignment and phylogenetic relationship第96-97页
            4.2.4. Test for selection and functional divergence analysis第97页
            4.2.5. Expression analysis of OsA TG6 gene family and co-expressed genes inrice based on microarray data第97页
            4.2.6. Quantitative real-time PCR第97-98页
            4.2.7. Analysis of stress-related cis-acting elements第98页
        4.3. Results第98-113页
            4.3.1. ATG6 homologs in rice genome第98-103页
            4.3.2. Evolution of ATG6 family第103-106页
            4.3.3. Expression profile of OsATG6 genes第106-108页
            4.3.4. Stress related Cis-acting elements and co-expressed genes第108-113页
        4.4. Discussion第113-116页
SUMMARY第116-118页
MAIN FINDINGS第118-120页
APPENDIX第120-127页
REFERENCES第127-141页
LIST OF PUBLICATIONS第141-142页
ACKNOWLEDGEMENT第142页

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