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CRISPR/Cas9介导的TMS5和LTPL164基因编辑在水稻中的应用

摘要第6-7页
Abstract第7-8页
LIST OF ABBREVIATIONS第12-15页
CHAPTER1 INTRODUCTION第15-32页
    1.1 General introduction第15-18页
    1.2 Review of literature第18-32页
        1.2.1 Heterosis and hybrid rice第18页
        1.2.2 Three-line hybrid system第18-19页
        1.2.3 Two-line hybrid system第19-20页
        1.2.4 Developed EGMS lines for two-line hybrid system第20-22页
        1.2.5 Important loci that control EGMS第22页
        1.2.6 Advantages of two-line hybrid system第22-23页
        1.2.7 Lipid transfer protein第23-24页
        1.2.8 Role of lipid transfer protein in plants第24-26页
        1.2.9 Clustered regularly interspaced short palindromic repeat/Cas(CRISPR/Cas)system第26-27页
        1.2.10 CRISPR/Cas9 system第27-28页
        1.2.11 The application of Cas9/sgRNA system for plant genome editing第28-29页
        1.2.12 Success of CRISPR/Cas9 system in plants第29-30页
        1.2.13 The future application of CRISPR/Cas9 in agriculture第30-32页
CHAPTER2 Generation of New Thermo-sensitive Genic Male Sterile Rice Line by Knocking out TMS5 Gene based on CRISPR/Cas9 System第32-61页
    2.1 Introduction第32-33页
    2.2 Materials and methods第33-45页
        2.2.1 Plant materials and growing conditions第33页
        2.2.2 Vector construction and rice transformation第33-35页
        2.2.3 Extraction of total DNA from leaves(SDS method)第35-37页
        2.2.4 PCR amplification system(KOD-FX method)第37页
        2.2.5 Mutation detection and analysis of transgenic plants第37-38页
        2.2.6 Phenotypic analysis of T-DNA-free segregants第38页
        2.2.7 Procedure of RNA extraction第38-40页
        2.2.8 Synthesis of cDNA第40页
        2.2.9 Procedure of Real-time PCR(RT-PCR)第40-42页
        2.2.10 Extraction of protein and Western blot analysis第42-44页
        2.2.11 The performance of F_1 hybrids made with YK17S第44页
        2.2.12 Fertilizer management第44页
        2.2.13 Data collection of yield traits第44-45页
        2.2.14 Statistical analysis第45页
    2.3 Results第45-58页
        2.3.1 The mutation of TMS5 via CRISPR/Cas第45-47页
        2.3.2 Morphological features of the tms5 mutants第47-49页
        2.3.3 The effect of temperature on the pollen production in the tms5 mutants第49-52页
        2.3.4 The suitability of YK17S1 for two-line hybrid breeding第52-58页
    2.4 Discussion第58-60页
    2.5 Conclusion第60-61页
CHAPTER3 The Function Analysis of a Putative Lipid Transfer Protein OsLTPL164 in Grain Development and Quality in Rice第61-88页
    3.1 Introduction第61-62页
    3.2 Materials and methods第62-73页
        3.2.1 Phylogenetic analysis第62页
        3.2.2 Plant materials and growing conditions第62-63页
        3.2.3 Vector construction and rice transformation第63页
        3.2.4 Mutation detection and analysis of transgenic plants第63-64页
        3.2.5 Transcription profiling第64页
        3.2.6 Determination of dry matter accumulation第64页
        3.2.7 Data collection for yield traits第64页
        3.2.8 Determination of total starch content第64-66页
        3.2.9 Determination of amylose content第66页
        3.2.10 Determination of total protein content第66-67页
        3.2.11 Determination of total lipid and fatty acid content第67页
        3.2.12 GUS staining第67-68页
        3.2.13 Vector construction and plasmid extraction for subcellular localization第68-69页
        3.2.14 Isolation and transformation of rice protoplasts第69-73页
        3.2.15 Sample preparation and microscopy第73页
        3.2.16 Seed germination assays第73页
        3.2.17 Statistical analysis第73页
    3.3 Results第73-84页
        3.3.1 Structural and sequence analysis of OsLTPL第73-74页
        3.3.2 The Mutation of OsLTPL164 via CRISPR/Cas第74-76页
        3.3.3 Expression pattern,GUS assay and subcellular localization of OsLTPL第76-78页
        3.3.4 Morphological features of cr-ltp164 mutant第78-81页
        3.3.5 Effects of knockout OsLTPL164 on quality traits第81页
        3.3.6 Effects of knockout OsLTPL164 on seed germination第81页
        3.3.7 The expression of fatty acid biosynthesis related genes第81-84页
    3.4 Discussion第84-87页
    3.5 Conclusion第87-88页
Chapter4 Major findings and future perspectives第88-89页
    4.1 Major findings第88页
    4.2 Future perspectives第88-89页
REFERENCES第89-100页
LIST OF PUBLICATION DURING PH.D STUDY第100-101页
ACKNOWLEDGEMENTS第101-103页
AUTHOR’S RESUME第103页

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