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利用BSA-seq图位克隆两个水稻重要基因

Abbreviations第5-9页
摘要第9-11页
Abstract第11-13页
Introduction第14-16页
Chapter 1 Literature Review第16-33页
    1.1 Tillering development in rice第16-20页
        1.1.1 Initiation of tillers in rice第17页
        1.1.2 Factors influencing tiller development第17页
        1.1.3 Hormones controlling tillering in rice第17-19页
        1.1.4 Genes regulating tillering and branching第19-20页
    1.2 Flower Development in Rice第20-24页
        1.2.1 ABC model第21-22页
        1.2.2 Lemma and palea morphology第22-23页
        1.2.3 Lodicule morphology第23页
        1.2.4 Gynoecium sterility第23-24页
        1.2.5 Grain size第24页
    1.3 Meristem Development in Rice第24-29页
        1.3.1 Wuschel-related homeobox (WOX) genes第25-27页
        1.3.2 CLAVATA-WUSCHEL pathway第27-29页
        1.3.3 WUSCHEL and AGAMOUS interactions in floral meristems第29页
    1.4 Arginine第29-31页
    1.5 Bulked segregant analysis (BSA) and Whole Genome Sequencing第31-33页
Chapter 2 Identification and Cloning of Sterile and Reduced Tillering 1 in Rice第33-54页
    2.1 Materials and Methods第34-37页
        2.1.1 Plant materials and field experiments第34页
        2.1.2 Fast mapping of SRT1 using bulked segregant analysis by sequencing (BSA-seq)第34-35页
        2.1.3 Fine mapping of SRTl第35-36页
        2.1.4 Pollen viability assay第36页
        2.1.5 Multiple sequence alignment第36-37页
        2.1.6 Protein 3D modeling第37页
        2.1.7 Constructs of GUS (β-glucuronidase) Expressing System, Transformation, and GUS staining第37页
    2.2 Results第37-48页
        2.2.1 Greatly reduced number of tillers in srtl第37-40页
        2.2.2 Complete female sterility in srtl第40-41页
        2.2.3 A recessive sporophytic mutation第41-42页
        2.2.4 Co-segregation of sterility and tillering defects in srt1第42页
        2.2.5 Mapping of SRT1第42-44页
        2.2.6 Identification of srt1 as LOC_Os04g56780第44-45页
        2.2.7 Mutation in homeobox of OsWUS第45-46页
        2.2.8 Expression Patterns of OsWUS第46-48页
    2.3 Discussion第48-54页
        2.3.1 SRT1 controls tillering and panicle branching in rice第48-49页
        2.3.2 Mutation in srtl results in complete female sterility第49-51页
        2.3.3 SRT1 influence the spikelet development第51页
        2.3.4 The function of homeobox in OsWUS第51-54页
Chapter 3 Identification and Cloning of Pepper-Shaped Husk 1 in Rice第54-69页
    3.1 Materials and Methods第55-58页
        3.1.1 Plant Materials and phenotype observation第55页
        3.1.2 Pollen viability assay第55页
        3.1.3 Mapping of PSH1 using BSA sequencing method第55-56页
        3.1.4 Fine Mapping of the PSH1第56-57页
        3.1.5 Detection of Oxidative Stress第57-58页
    3.2 Results第58-65页
        3.2.1 psh1 mutant produces pepper-shaped spikelet第58-59页
        3.2.2 Abnormal grain size and shape of psh1-1第59-60页
        3.2.3 Genetic analysis of psh1-1第60-61页
        3.2.4 Mapping of the PSH1第61-62页
        3.2.5 Identification of PSH1第62-63页
        3.2.6 PSH1-1/2 are new alleles of OsARG第63-64页
        3.2.7 PSH1-1/2 possible effects of the Arginine Catabolic failure第64-65页
    3.3 Discussion第65-69页
        3.3.1 Does OsARG regulate the development of lemma and palea in psh1-1/2?第65-66页
        3.3.2 OsARG may regulate the flower opening in psh1-1/2第66-67页
        3.3.3 Possible Effects on Failure of Arginase Activity第67-68页
        3.3.4 Presence of Two AHele Confirms the Gene第68-69页
References第69-79页
Appendix第79-89页
    1 DNA Extraction with CTAB Method第79页
    2 DNA Extraction with SDS Method第79-80页
    3 Detection of DNA using Agarose Gel第80-81页
    4 Resin Sectioning第81-82页
    5 GUS Transformation第82-85页
    6 Detection of Oxidative Stress第85-86页
    7 Detection of Superoxide Anion using ftO-soluble Tetrazolium salt第86页
    8 Detection of Hydrogen Peroxide using Potassium Titanium (Ⅳ) Oxalate第86页
    9 OsWUS Structure & Genomic Sequence第86-87页
    10 OsArginase Structure & Genomic Sequence第87-89页
Publication(s)第89-90页
Acknowledgement第90页

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