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Estimation of Genetic Diversity and Genetic Distances of Chicken Populations in Haimen-China with Two-fold Techniques

TITLE第2-3页
DEDICATION第3-4页
CERTIFICATION第4-5页
ACKNOWLEDGEMENTS第5-7页
ABSTRACT第7页
ENGLISH VERSION第7页
CHINESE VERSION第11-14页
TABLE OF CONTENTS第14-16页
LIST OF TABLES第16-17页
LIST OF FIGURES第17-18页
CHAPTER ONE第18-27页
    1.0 INTRODUCTION第18-27页
CHAPTER TWO第27-36页
    2.0 LITERATURE REVIEW第27-29页
    2.1 GENETIC MARKERS IN THE CHICKENS第29-30页
    2.2 THE CHICKEN GENOME第30页
    2.3 TECHNIQUES FOR THE MEASUREMENTS OF DIVERSITY IN ANIMAL AND POULTRY GENETIC RESOURCES第30-36页
CHAPTER THREE第36-51页
    3.0 MATERIALS AND METHODS第36页
    3.1 EXPERIMENTAL STOCKS AND SAMPLE SIZE第36-37页
    3.2 BLOOD COLLECTION AND PROCESSING OF BLOOD SAMPLES第37页
    3.3 DNA ISOLATION AND PURIFICATION第37-38页
    3.4 DNA YIELD AND PURITY第38-39页
    3.5 RAPD-PCR PROTOCOLS AND AGAROSE GEL ELECTROPHORESIS第39-41页
        3.5.1 PCR conditions and programme第39-40页
        3.5.2 Submerged agarose gel electrophoresis (SAGE)第40-41页
    3.6 PREPARATION OF POOLED DNA SAMPLES AND RAPD-PCR PROTOCOL OF THE BULKED SAMPLES第41页
    3.7 MICROSATELLITE ANALYSIS第41-42页
    3.8 MICROSATELLITE PCR PROTOCOL AND ELECTROPHORESIS第42-44页
        3.8.1 Polyacrylamide gel electrophoresis (PAGE)第43-44页
    3.9 STATISTICAL ANALYSES第44-51页
CHAPTER FOUR第51-78页
    4.0 RESULTS第51-54页
    4.1 PROPORTION OF POLYMORPHISMS IN POPULATIONS第54-55页
    4.2 AMPLIFICATION RESULTS OF POPULATION POOLED DNAs第55-56页
    4.3 BAND SHARING COEFFICIENTS AND GENE DIVERSITY VALUES OF THE PAIRWISE CHICKEN POPULATIONS第56-58页
    4.4 AVERAGE PAIRWISE PERCENT DIFFERENCE (APD) AMONG THE FOUR CHICKEN POPULATIONS第58页
    4.5 GENETIC DISTANCES AMONG THE FOUR CHICKEN POPULATIONS USING RAPD MARKERS第58-59页
    4.6 MICROSATELLITE LOCI ANALYSIS AND RESULTS第59-68页
        4.6.1 Rare/uncommon/private alleles第68页
    4.7 GENETIC DIVERSITY (VARIABILITY) AMONG THE CHICKEN POPULATIONS EXAMINED第68-73页
        4.7.1 Allele frequency第68-69页
        4.7.2 Heterozygosity第69-70页
        4.7.3 Effective number of allele and polymorphism information content第70-73页
    4.8 GENETIC DIVERGENCE/DIFFERENTIATION AND SHANNON INFORMATION INDEX第73-74页
    4.9 GENETIC DISTANCES第74-78页
CHAPTER FIVE第78-90页
    5.0 DISCUSSION第78页
    5.1 RAPD DNA FRAGMENT BANDS第78-80页
    5.2 BAND SHARING COEFFICIENT, HETEROZYGOSITY AND GENETIC DISTANCE第80-81页
    5.3 MICROSATELLITES ALLELE FREQUENCY INTERPRETATION第81-83页
    5.4 HETEROZYGOSITY, EFFECTIVE ALLELE NUMBER AND POLYMORPHISM INFORMATION CONTENT第83-84页
    5.5 PHYLOGENETIC RELATIONSHIPS第84-85页
    5.6 COMPARISONS OF THE TWO ASSAY METHODS USED IN THIS STUDY第85-87页
    5.7 FUTURE LINE OF STUDY第87-90页
CHAPTER SIX第90-94页
    6.0 SUMMARY, CONCLUSION AND RECOMMENDATIONS第90-94页
REFERENCES第94-106页
PAPERS IN PEER-REVIEWED JOURNALS WITHIN THE STUDY PERIOD第106-107页
RECENTLY SUBMITTED PAPERS FOR PUBLICATION第107-111页

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