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Semi-Quantitative RT-PCR and SNPs Techniques to Assess Expression Level Variation and Mutation of TCF3 Gene in Different Duck and Chicken Breeds

ABSTRACT第12-15页
摘要第16-20页
CHAPTER ONE Introduction第20-24页
CHAPTER TWO Literature Review第24-31页
    2.1 Characterization and functional of avian TCF3 gene第26-27页
    2.2 Semi-quantitative RT-PCR technique to assess TCF3 expression第27-28页
    2.3 TCF3 expression differential第28-29页
    2.4 Selection depends on gene expression variations第29-30页
    2.5 Single nucleotide polymorphisms (SNPs)第30-31页
CHAPTER THREE Materials and Methods第31-40页
    3.1 Experimental stock and sample size第31-32页
        3.1.1 Duck breeds第31页
        3.1.2 Chicken breeds第31-32页
    3.2 Phenotypic measurements第32-33页
    3.3 Blood samples collection and processing第33页
    3.4 Samples collection and preparation第33-35页
        3.4.1 DNA isolation第33-34页
        3.4.2 DNA purification and concentration第34-35页
    3.5 RNA extraction and purification第35页
    3.6 Reverse transcription (RT)第35页
    3.7 Primer sequences第35-36页
    3.8 Semi-quantitative RT-PCR第36-38页
        3.8.1 Submerged agarose gel electrophoresis (SAGE)第37页
        3.8.2 Gel image acquisition and quantitative analysis第37-38页
    3.9 SSCP-PCR protocol第38-39页
        3.9.1 SSCP-PCR reactions第38页
        3.9.2 Polyacrylamide gel electrophoresis (PAGE)第38-39页
        3.9.3 Detection of single nucleotide polymorphisms (SNPs)第39页
    3.10 Statistical analysis第39-40页
CHAPTER FOUR Results第40-63页
    4.1 TCF3 expression patterns第40-41页
    4.2 Differential expression of TCF3 in different samples第41-42页
    4.3 Calibration of RT-PCR signals第42-43页
    4.4 Variations of TCF3 relative expression level第43-46页
        4.4.1 Chicken breeds第43页
        4.4.2 Duck breeds第43-46页
    4.5 Association of TCF3 relative expression level and phenotypic characters第46-52页
        4.5.1 Chicken breeds第46页
        4.5.2 Duck breeds第46-52页
    4.6 Detection of single nucleotide polymorphisms (SNPs)第52-60页
        4.6.1 Single nucleotide polymorphisms confirmation第53-55页
        4.6.2 SSCP-PCR product automated sequencing第55-57页
        4.6.3 Hardy-Weinberg Equilibrium (HWE) analysis第57-60页
    4.7 Association of TCF3 relative expression level and SNPs..第60-61页
    4.8 The effect of SNPs genotypes and sex upon TCF3 relative expression level第61-63页
CHAPTER FIVE Discussion第63-70页
    5.1 Expression pattern of TCF3 factors E12/E47第63页
    5.2 Monitoring of TCF3 relative expression variations第63-65页
    5.3 TCF3 relative expression and sexual dimorphism第65-66页
    5.4 Association of TCF3 relative expression and body weight characters第66-67页
    5.5 Single nucleotide polymorphisms (SNPs) analysis第67-68页
    5.6 Correlation between TCF3 relative expression and SNPs.第68-70页
CHAPTER SIX Summary and Conclusion第70-74页
References第74-83页
Acknowledgement第83-85页
Papers in Peer-reviewed Journals第85-86页

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