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Physiological, Biochemical and Molecular Changes Associated with Acquisition of Desiccation Tolerance in Development Orthodox Seeds of Jatropha Curcas

ACKNOWLEDGEMENTS第6-8页
ABSTRACT第8-10页
TABLE OF CONTENTS第11-16页
LIST OF FIGURES第16-19页
LIST OF TABLES第19-20页
ABBREVIATIONS第20-23页
CHAPTER Ⅰ Introduction第23-34页
    1.1 Desiccation damage第23页
    1.2 Definition of desiccation tolerance第23-24页
    1.3 Desiccation tolerance in seeds第24-25页
    1.4 Mechanisms of desiccation tolerance第25-26页
    1.5 Antioxidative mechanism第26-30页
        1.5.1 Reactive oxygen species (ROS) sources第26-27页
        1.5.2 Damage risks by ROS accumulation第27页
        1.5.3 Signal role of ROS in metabolism第27-28页
        1.5.4 Antioxidant enzymes第28-30页
            1.5.4.1 Superoxide dismutases (SOD)第28页
            1.5.4.2 Catalase (CAT)第28-29页
            1.5.4.3 Enzymes of the ascorbate-glutathione cycle第29-30页
    1.6 Production of protective proteins during seed development第30-32页
        1.6.1 Late embryogenesis abundant (LEA) proteins第30-31页
        1.6.2 Small heat shock proteins (HSPs)第31-32页
    1.7 Jatropha curcas as an experimental material第32页
    1.8 Aim of the present work第32-34页
CHAPTER Ⅱ Materials and methods第34-65页
    2.1 Plant materials第34-35页
    2.2 Measurement of seed weight, volume and moisture content第35页
    2.3 Germination test第35页
    2.4. Measurement of relative growth rate第35-36页
    2.5 Desiccation treatments第36页
    2.6 Conductivity test第36页
    2.7 Evaluation of hydrogen peroxide (H_2O_2) content第36-37页
    2.8 Evaluation of lipid peroxidation product第37页
    2.9 Antioxidant enzyme assays第37-39页
        2.9.1 Superoxide dismutases (SOD) assay第38页
        2.9.2 Catalase (CAT), ascorbate peroxidase (APX) and glutathione reductase (GR) activity assays第38-39页
        2.9.3 Dehydro ascorbate reductase (DHAR) assay第39页
    2.10 Native polyacrylamide gel electrophoresis (Native-PAGE) analysis of antioxidant enzymes第39-43页
        2.10.1 Native-PAGE solutions第39-40页
        2.10.2 Preparing the gels第40-41页
        2.10.3 SOD activity第41-42页
        2.10.4 CAT activity第42页
        2.10.5 APX activity第42页
        2.10.6 GR activity第42-43页
    2.11 Protein isolation and analysis第43-49页
        2.11.1 Crude protein第43页
        2.11.2 Heat stable protein第43页
        2.11.3 Protein quantification第43-44页
        2.11.4 Sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE)第44-47页
            2.11.4.1 SDS-PAGE solutions第44-45页
            2.11.4.2 Preparing the gels第45-47页
        2.11.5 Western blot analysis第47-49页
            2.11.5.1 Western blot buffers第47-48页
            2.11.5.2 Western blot procedures第48-49页
    2.12 First-strand cDNA Synthesis第49-52页
        2.12.1 Total RNA extraction第49-50页
        2.12.2 Determination of RNA concentration第50-51页
        2.12.3 DNase digestion第51页
        2.12.4 First-strand cDNA synthesis reaction第51-52页
    2.13 Polymerase Chain reaction (PCR)第52-62页
        2.13.1 Common procedure for PCR第52页
        2.13.2 Separation of DNA by agarose gel electrophoresis第52-53页
        2.13.3 Semi-quantitative reverse transcriptase polymerase chain reaction第53页
        2.13.4 Rapid Amplification of cDNA 3' Ends (3'-RACE)第53-56页
            2.13.4.1 First-strand cDNA synthesis for 3'-RACE第54-55页
            2.13.4.2 3'-RACE reaction第55-56页
        2.13.5 Quantitative real-time polymerase chain reaction analysis (qRT-PCR)第56-62页
            2.13.5.1 qRT-PCR overview第56-59页
            2.13.5.2 Primer design and PCR efficiency第59-60页
            2.13.5.3 qRT-PCR reaction第60-61页
            2.13.5.4 Thermal cycling conditions第61-62页
    2.14 E. coli transformation第62-64页
        2.14.1 Purification of DNA fragment from agarose gel第62页
        2.14.2 Solutions and media第62-63页
        2.14.3 Preparing competent cells第63-64页
        2.14.4 Transformation procedure第64页
    2.15 Sequence analysis第64-65页
CHAPTER Ⅲ Changes in production and scavenging of hydrogen peroxide during natural and artificial dehydration of developing Jatropha curcas seeds第65-100页
    3.1 Introduction第65-67页
    3.2 Results第67-91页
        3.2.1 Changes during the maturation and natural desiccation phase第67-79页
            3.2.1.1 Changes in J. curcas fruits and seed size during development第67-69页
            3.2.1.2 Changes in fresh and dry weight and water content of jatropha curcas seeds during development第69-70页
            3.2.1.3 Germinability and leakage rate of electrolyte of whole seeds and isolated embryos during development第70-71页
            3.2.1.4 Hydrogen peroxide contents and lipid peroxidation第71-73页
            3.2.1.5 Antioxidant enzyme activities第73-76页
            3.2.1.6 Expression profiling of antioxidant enzyme genes第76-79页
        3.2.2 Effect of artificial dehydration on developing seeds第79-84页
            3.2.2.1 Effect of dehydration on seed water content第79-80页
            3.2.2.2 Effect of dehydration on seed germinability第80-82页
            3.2.2.3 Effect of dehydration on membrane leakage第82-83页
            3.2.2.4 H_2O_2 and MDA contents第83-84页
        3.2.3 Comparison between natural and artificial dehydration effects on H_2O_2 levels and antioxidant enzyme activities of developing seeds第84-91页
            3.2.3.1 Seed development and acquisition of desiccation tolerance第85-86页
            3.2.3.2 H_2O_2 and MDA contents第86-87页
            3.2.3.3 Antioxidant enzyme activities第87-91页
    3.3 Discussion第91-100页
        3.3.1 Changes in seed germinability during development and after artificial dehydration第91-92页
        3.3.2 Changes in H_2O_2 and MDA第92-94页
        3.3.3 Changes in antioxidant enzymes第94-100页
CHAPTER Ⅳ Changes in protein expression profiles during the maturation and after artificial dehydration of developing Jatropha curcas seeds第100-109页
    4.1 Introduction第100-101页
    4.2 Results第101-108页
        4.2.1 Total protein profile during seed development第101-104页
        4.2.2 Changes in total protein profile after artificial dehydration of developing seeds第104页
        4.2.3 Changes in heat shock protein profile during dehydration at different developmental stages第104-105页
        4.2.4 Changes in membrane leakage during dehydration at different developmental stages第105-108页
    4.3 Discussion第108-109页
CHAPTER Ⅴ Identification and characterization of two dehydrin cDNAs during maturation of Jatropha curcas seeds第109-128页
    5.1 Introduction第109-111页
    5.2 Results第111-125页
        5.2.1 Dehydrins were induced by maturation and natural dehydration process第111-113页
        5.2.2 Identification and characterization of dehydrin cDNAs from J. curcas seeds第113-121页
            5.2.2.1 Jatropha curcas dehydrin-1 (JcDHN-1)第114-116页
                5.2.2.1.1 Characterization of the full length cDNA of JcDHN-1第114-115页
                5.2.2.1.2 Homology analysis of JcDHN-1 protein with dehydrins from other plants第115-116页
            5.2.2.2 Jatropha curcas dehydrin-2 (JcDHN-2)第116-121页
                5.2.2.2.1 Characterization of the full length cDNA of JcDHN-2第116-119页
                5.2.2.2.2 Homology analysis of JcDHN-2 protein with dehydrins from other plants第119-121页
        5.2.3 Alignment of JcDHN-1 and JcDHN-2 proteins第121-123页
        5.2.4 Analysis of Jatropha curcas DHNs gene expression by qRT-PCR第123-125页
    5.3 Discussion第125-128页
CHAPTER Ⅵ Identification and characterization of two small heat shock proteins cDNAs during maturation of Jatropha curcas seeds第128-143页
    6.1 Introduction第128-129页
    6.2 Results第129-141页
        6.2.1 Detection of sHSPs during maturation and natural dehydration process第129页
        6.2.2 Identification and characterization of detected sHSPs第129-137页
            6.2.2.1 Jatropha curcas heat shock protein-1 (JcHSP-1)第131-134页
                6.2.2.1.1 Characterization of the full length cDNA of JcHSP-1第131页
                6.2.2.1.2 Homology analysis of JcHSP-1 protein第131-134页
            6.2.2.2 Jatropha curcas heat shock protein-2 (JcHSP-2)第134-137页
                6.2.2.2.1 Characterization of the full length cDNA of JcHSP-2第134页
                6.2.2.2.2 Homology analysis of JcHSP-2 protein第134-137页
        6.2.3 Alignment of JcHSP-1 and JcHSP-2第137-138页
        6.2.4 Analysis of Jatropha curcas sHSPs gene expression by qRT-PCR第138-141页
    6.3 Discussion第141-143页
General discussion第143-145页
References第145-164页
摘要第164-165页

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